the bioinformatics lab

Mar 02 2025 53 ep. 19 mins 20
the bioinformatics lab Podcast artwork

A podcast where Kevin Libuit and Andrew Page share thoughts on the latest advancements in Bioinformatics.

  Science
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EP 50: Software Naming

Mar 02 2025 10 mins  
Summary In this episode of the Bioinformatics Lab podcast, Kevin Libuit and Andrew Page discuss the art and challenges of naming bioinformatics tools. They explore various naming conventions, the significance of unique and memorable names, and the creative strategies employed by developers. The conversation also touches on the importance of trademark considerations and the potenti

EP 49: H5N1 Outbreak

Feb 12 2025 17 mins  
Summary In this episode of the Bioinformatics Lab Podcast, Kevin Libuit and Andrew Page discuss the ongoing H5N1 outbreak, its implications for public health, and the economic impact on agriculture. They explore the nature of avian influenza, the risks of mammalian spillover, and the importance of genomic surveillance in understanding and combating the virus. The conversation high

EP 48: The Kalamari Database

Feb 01 2025 14 mins  
Kalamari GitHub: https://github.com/lskatz/Kalamari & Public Health Announcement: https://journals.asm.org/doi/10.1128/mra.00963-24 Summary In this episode of the Bioinformatics Lab podcast, Kevin Libuit and Andrew Page discuss a public health announcement regarding the Kalamari database, a curated reference database for public health pathogenomics. They explore the importance of

EP 47: The Job Hunt Experience pt. 02

Feb 01 2025 15 mins  
Summary In this episode of the Buy Informatics Lab podcast, Kevin Libuit and Andrew Page discuss the intricacies of the job market from a recruiter's perspective. They share insights on how to effectively navigate the recruitment process, the importance of leveraging professional networks, and the role of online platforms like LinkedIn and GitHub in identifying and attracting tale

Ep. 46: The Job Hunt Experience pt. 01

Dec 31 2024 16 mins  
Summary In this episode, Kevin Libuit and Andrew Page discuss their personal experiences with job hunting in the bioinformatics field, emphasizing the importance of professional networks and genuine relationships. They share anecdotes about how their careers were shaped by connections made through academia and social interactions. The conversation highlights actionable advice for

Ep 45: Pathogen Focus - MPXV

Nov 20 2024 9 mins  
Summary In this episode of the Bioinformatics Lab Podcast, Kevin Libuit and Andrew Page discuss the complexities of analyzing MPXV genomes, particularly in light of recent outbreaks. They explore the differences between MPXV and other viruses, the challenges faced in genomic sequencing and analysis, and the importance of public health responses, including vaccination efforts. The

Ep 44: Career Focus:Julian Paganini & Olinto Linares-Perdomo

Oct 28 2024 25 mins  
Note: This episode was recorded in Spanish. A video of this recording with AI-generated, English subtitles is available on YouTube: https://www.youtube.com/watch?v=FNjUbtcm9Z4 Summary In this episode of the Bioinformatics Lab Podcast, Kevin Libuit hosts Julian and Olinto in a special Spanish-language episode. They discuss their journeys in bioinformatics, the importance of collab

Ep 43: Pathogen Focus: Dengue Virus

Oct 11 2024 11 mins  
Summary In this episode of the Bioinformatics Lab Podcast, Kevin Libuit and Andrew Page discuss the challenges and limitations in analyzing dengue virus genomes using bioinformatics. They highlight the importance of open-source tools, the need for better data sharing, and the complexities of virus typing compared to bacteria. The conversation emphasizes the neglected status of den

Ep 42: GMI 14, Barcelona, Spain

Sep 23 2024 10 mins  
Summary In this episode of the Bioinformatics Lab podcast, Kevin Libuit and Andrew Page discuss their experiences at the GMI 14 conference in Barcelona, reflecting on the importance of metadata in microbial bioinformatics, the role of AI in data sharing, and the significance of communicating the 'why' behind bioinformatics initiatives. They explore differing opinions on metadata's

Ep 41 Importance of Dev Environments

Sep 02 2024 16 mins  
Summary In this episode, Kevin and Andrew discuss the importance of dev environments in bioinformatics and the adoption of software engineering practices. They highlight the need for separate environments for development, production, and staging, and the importance of stability and consistency in production code. They also emphasize the role of testing and automated processes in e